Improving projections of trait and population dynamics

Some R (and stats) resources I collected over the yeaRS

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Data structure and loops

Plotting

Base plots; Plotting with ggplot; Colorblind-friendly palette;                                                                                                 


Plotting prediction intervals: poisson GLMER

Ecological statistics

A very detailed set of lectures on ecological modeling using Frequentist and Bayesian approaches: Ecology 563 by J. Weiss


Analysis of time-series data: a brief introduction; overview of R functions; canceling out trends; use various R packages; GAMM; MGCV; ARMA


Seasonal analyses: season/trend decomposition; seasonal and trend decomposition with Loess (STL); seasonal data with GAMs; more GAMs for seasonal data; seasonal ARIMA; seasonal ARIMA 2


Model temporal autocorrelation: a general tutorial; mixed models


Model spatial autocorrelation: a general tutorial;


Model selection: MuMIn


Model fitting : Tips for nonlinear regression


Lm(er): ANOVA = Linear regression; GLMM Faq

Population ecology

General lectures on population dynamics: Exponential & logistic growth;


Matrix population models: Periodic matrices